AHT risk calculator R Shiny application to estimate and compare risks of cardiovascular events and acute kidney injury.
CETEG R-package implements the CEll Type Extractor for Gene expression (CETEG) for detecting the cell type specific expression profiles from bulk gene expression data.
DCeN R-package implements the Dynamically Co-expressed Neighborhoods (DCeN) for ranking genes in genome-wide time-resolved gene expression profiling studies.
DIAtools Software package for analyzing mass spectrometry data acquired using data independent acquisition (DIA) mode.
EBSEA R-package implements differential expression based on exon counts of genes obtained from RNA-seq sequencing data.
ILoReg R-package for high-resolution cell population identification from single-cell RNA-seq data.
LC R-program implements a robust (longitudinal) binary classification method called Likelihood Contrasts (LC).
PASI Pathway analysis tool implements Pathway Analysis for Sample-level Information (PASI) that provides pathway values for each analyzed sample and pathway separately.
PECA R-package implements Probe/peptide-level Expression Change Averages (PECA) for improved differential expression analysis for Affymetrix microarrays and proteomics.
Phosphonormalizer R-package compensates for the bias introduced by median normalization in phosphoproteomics.
RepViz R-package enables the view of a genomic region in a simple and efficient way.
RODEO (RObust DEcOnvolution) is a robust deconvolution tool that provides estimates of how strongly each cell type expresses each gene based on bulk expression data and cell type proportions.
ROTS R-package implements the reproducibility-optimized test statistic (ROTS) for ranking genes or proteins in terms of differential expression in two-group comparisons.
SimPhospho Proteomics software for simulation of spectra of phosphopeptides enabling confident phosphosite assignment.
SIVS R-package for iterative feature selection to shrink down the feature space into a small and yet robust set.