AHT risk calculator R Shiny application to estimate and compare risks of cardiovascular events and acute kidney injury.
COVID-19 browser Online tool for exploring COVID-19 specific gene signature across multiple datasets at both bulk and single-cell levels.
DCeN R-package implements the Dynamically Co-expressed Neighborhoods (DCeN) for ranking genes in genome-wide time-resolved gene expression profiling studies.
DIAtools Software package for analyzing mass spectrometry data acquired using data independent acquisition (DIA) mode.
EBSEA R-package implements differential expression based on exon counts of genes obtained from RNA-seq sequencing data.
ILoReg R-package for high-resolution cell population identification from single-cell RNA-seq data.
LC R-program implements a robust (longitudinal) binary classification method called Likelihood Contrasts (LC).
PASI Pathway analysis tool implements Pathway Analysis for Sample-level Information (PASI) that provides pathway values for each analyzed sample and pathway separately.
PECA R-package implements Probe/peptide-level Expression Change Averages (PECA) for improved differential expression analysis for Affymetrix microarrays and proteomics.
Phosphonormalizer R-package compensates for the bias introduced by median normalization in phosphoproteomics.
PhosPiR An automatic pipeline to analyze phosphoproteomics.
PowerExplorer A power and sample size estimation tool for RNA-Seq and quantitative proteomics data.
RepViz R-package enables the view of a genomic region in a simple and efficient way.
RODEO (RObust DEcOnvolution) is a robust deconvolution tool that provides estimates of how strongly each cell type expresses each gene based on bulk expression data and cell type proportions.
RolDE Robust longitudinal differential expression for detecting longitudinal differential expression.
ROTS R-package implements the reproducibility-optimized test statistic (ROTS) for ranking genes or proteins in terms of differential expression in two-group comparisons.
scShaper A tool for linear trajectory inference from single-cell RNA-seq data.
SimPhospho Proteomics software for simulation of spectra of phosphopeptides enabling confident phosphosite assignment.
SIVS R-package for iterative feature selection to shrink down the feature space into a small and yet robust set.
u-PA Longitudinal analysis of ultrasensitive-PSA for predicting possible biochemical recurrence after radical prostatectomy.
Weightloss predictor A tool to estimate weight loss after 9 months of intervention, based on weight entries.